Software

TreeExp

TreeExp is an R package developed to provides useful phylogenetic tools applicable to RNA-seq data.

DIVERGE

Detecting functional divergence between member genes of a protein family based on (site-specific) shifted evolutionary rates after gene duplication or speciation.

CanDriS

Detecting functional divergence between member genes of a protein family based on (site-specific) shifted evolutionary rates after gene duplication or speciation.

MATTE

Module Alignment of TranscripTomE analysis.
Please address your comments on our software to xgu@iastate.edu.